at.tuwien.ifs.somtoolbox.output
Class HTMLOutputter
java.lang.Object
at.tuwien.ifs.somtoolbox.output.HTMLOutputter
- All Implemented Interfaces:
- SOMToolboxApp
public class HTMLOutputter
- extends java.lang.Object
- implements SOMToolboxApp
- Version:
- $Id: HTMLOutputter.java 3996 2011-01-19 15:05:13Z mayer $
- Author:
- Michael Dittenbach, Christoph Becker, Rudolf Mayer
Method Summary |
private void |
_write(GrowingSOM gsom,
java.lang.String fDir,
java.lang.String fName,
java.lang.String[] dataNames)
|
private double[] |
calcMinMax(GrowingSOM gsom)
|
private java.lang.String |
createHTML(GrowingSOM gsom,
java.lang.String fDir,
java.lang.String fName,
double[] minmax,
java.lang.String[] dataNames)
Creates the string containing the HTML representation of a map. |
private java.lang.String |
createMiniMap(java.lang.String fName,
Unit u)
|
private java.lang.String |
createTooltipDataTable(java.lang.String[] names,
double[] distances,
double minDistance,
double maxDistance,
java.lang.String[] hlDataNames)
|
private java.lang.String |
emptyUnitRepresentation(Unit u)
|
private java.lang.String |
expandedUnitRepresentation(Unit u,
double[] minmax,
java.lang.String fDir,
java.lang.String fName,
java.lang.String[] hlDataNames)
|
java.lang.String |
getLinksuffix()
|
private java.lang.String |
labelInfo(Unit u,
double[] minmax)
|
private java.lang.String |
leafUnitRepresentation(Unit u,
double[] minmax,
java.lang.String[] hlDataNames)
|
static void |
main(java.lang.String[] args)
Main method for standalone operation. |
private java.lang.String |
mapQuantizationInfo(GrowingSOM gsom)
|
private java.lang.String |
mapRepresentation(GrowingSOM gsom,
double[] minmax,
java.lang.String fDir,
java.lang.String fName,
java.lang.String[] dataNames)
|
private java.lang.String |
nonEmptyUnitRepresentation(Unit u,
double[] minmax,
java.lang.String fDir,
java.lang.String fName,
java.lang.String[] hlDataNames)
|
void |
setLinksuffix(java.lang.String linksuffix)
|
private java.lang.String |
unitRepresentation(Unit u,
double[] minmax,
java.lang.String fDir,
java.lang.String fName,
java.lang.String[] dataNames)
|
private java.lang.String |
upperLayerMapInfo(java.lang.String name,
Unit su)
|
void |
write(GHSOM ghsom,
java.lang.String fDir,
java.lang.String fName)
|
void |
write(GHSOM ghsom,
java.lang.String fDir,
java.lang.String fName,
java.lang.String[] dataNames)
Writes the HTML representation of a GHSOM to a file. |
void |
write(GrowingSOM gsom,
java.lang.String fDir,
java.lang.String fName)
|
void |
write(GrowingSOM gsom,
java.lang.String fDir,
java.lang.String fName,
java.lang.String[] dataNames)
Writes the HTML representation of a GrowingSOM to a file. |
private static void |
writeStyleFile(java.lang.String fDir)
|
private static void |
writeTooltipFile(java.lang.String fDir)
|
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
OPTIONS
public static final com.martiansoftware.jsap.Parameter[] OPTIONS
DESCRIPTION
public static java.lang.String DESCRIPTION
LONG_DESCRIPTION
public static java.lang.String LONG_DESCRIPTION
APPLICATION_TYPE
public static final SOMToolboxApp.Type APPLICATION_TYPE
styleFileName
private static final java.lang.String styleFileName
- See Also:
- Constant Field Values
tooltipFileName
private static final java.lang.String tooltipFileName
- See Also:
- Constant Field Values
_xmlHeader
private static final java.lang.String _xmlHeader
- See Also:
- Constant Field Values
_docType
private static final java.lang.String _docType
- See Also:
- Constant Field Values
_htmlTag
private static final java.lang.String _htmlTag
- See Also:
- Constant Field Values
_headTag
private static final java.lang.String _headTag
- See Also:
- Constant Field Values
_linkToStyle
private static final java.lang.String _linkToStyle
- See Also:
- Constant Field Values
_titleTag
private static final java.lang.String _titleTag
- See Also:
- Constant Field Values
_titleTagClose
private static final java.lang.String _titleTagClose
- See Also:
- Constant Field Values
_headTagClose
private static final java.lang.String _headTagClose
- See Also:
- Constant Field Values
_bodyTag
private static final java.lang.String _bodyTag
- See Also:
- Constant Field Values
_scriptTag
private static final java.lang.String _scriptTag
- See Also:
- Constant Field Values
_bodyTagClose
private static final java.lang.String _bodyTagClose
- See Also:
- Constant Field Values
_htmlTagClose
private static final java.lang.String _htmlTagClose
- See Also:
- Constant Field Values
linksuffix
private java.lang.String linksuffix
- suffix to append to hrefs. This allows the labelling of hrefs to omit the filesuffix, looks much better. defaults
to empty string for backwards compatibility
HTMLOutputter
public HTMLOutputter()
getLinksuffix
public java.lang.String getLinksuffix()
- Returns:
- the linksuffix currently used
- See Also:
linksuffix
setLinksuffix
public void setLinksuffix(java.lang.String linksuffix)
- Parameters:
linksuffix
- the new suffix to use- See Also:
linksuffix
main
public static void main(java.lang.String[] args)
- Main method for standalone operation. Three possible uses:
- generate HTML representation directly from unit description file
- label the already mapped data and generate HTML
- map data onto a trained SOM, label the data and generate HTML output.
b. and c. are convenience functions.
Options are:
- -m metricName, opt., default = L2Metric
- -n normalization method, opt., default = NONE
- -v input vector filename, opt.
- -l labeler, opt., default = null
- -n number of labels, opt., default = 5
- -t template vector filename, opt.
- -u unit description file, opt. (makes sense if no labeling is given and an already labeled map should be
written)
- -w weight vector filename, opt.
- -d dense input vector matrix, switch
- html filename, mand.
- Parameters:
args
- the execution arguments as stated above.
write
public void write(GHSOM ghsom,
java.lang.String fDir,
java.lang.String fName,
java.lang.String[] dataNames)
throws java.io.IOException
- Writes the HTML representation of a GHSOM to a file.
- Parameters:
ghsom
- The GHSOM to be written.fDir
- Directory where to write the file to.fName
- Filename without suffix. Usually the name of the training run.
- Throws:
java.io.IOException
write
public void write(GHSOM ghsom,
java.lang.String fDir,
java.lang.String fName)
throws java.io.IOException
- Throws:
java.io.IOException
write
public void write(GrowingSOM gsom,
java.lang.String fDir,
java.lang.String fName,
java.lang.String[] dataNames)
throws java.io.IOException
- Writes the HTML representation of a GrowingSOM to a file.
- Parameters:
gsom
- The growing SOM to be written.fDir
- Directory where to write the file to.fName
- Filename without suffix. Usually the name of the training run.
- Throws:
java.io.IOException
write
public void write(GrowingSOM gsom,
java.lang.String fDir,
java.lang.String fName)
throws java.io.IOException
- Throws:
java.io.IOException
_write
private void _write(GrowingSOM gsom,
java.lang.String fDir,
java.lang.String fName,
java.lang.String[] dataNames)
throws java.io.IOException
- Throws:
java.io.IOException
createHTML
private java.lang.String createHTML(GrowingSOM gsom,
java.lang.String fDir,
java.lang.String fName,
double[] minmax,
java.lang.String[] dataNames)
throws java.io.IOException
- Creates the string containing the HTML representation of a map.
- Parameters:
gsom
- The GrowingSOM to be written.fDir
- Directory where to write the file.fName
- Filename without suffix. Usually the name of the training run.minmax
- Array of double containing the minima and maxima of distances between data items and weight
vectors, and label values respectively. These values are used for coloring. [0] minimum distance, [1]
maximum distance, [2] minimum label value, [3] maximum label value.dataNames
- Array of strings containing data items to highlight on the map
- Returns:
- String containing the HTML representation.
- Throws:
java.io.IOException
upperLayerMapInfo
private java.lang.String upperLayerMapInfo(java.lang.String name,
Unit su)
mapQuantizationInfo
private java.lang.String mapQuantizationInfo(GrowingSOM gsom)
mapRepresentation
private java.lang.String mapRepresentation(GrowingSOM gsom,
double[] minmax,
java.lang.String fDir,
java.lang.String fName,
java.lang.String[] dataNames)
throws java.io.IOException
- Throws:
java.io.IOException
unitRepresentation
private java.lang.String unitRepresentation(Unit u,
double[] minmax,
java.lang.String fDir,
java.lang.String fName,
java.lang.String[] dataNames)
throws java.io.IOException
- Throws:
java.io.IOException
emptyUnitRepresentation
private java.lang.String emptyUnitRepresentation(Unit u)
nonEmptyUnitRepresentation
private java.lang.String nonEmptyUnitRepresentation(Unit u,
double[] minmax,
java.lang.String fDir,
java.lang.String fName,
java.lang.String[] hlDataNames)
throws java.io.IOException
- Throws:
java.io.IOException
expandedUnitRepresentation
private java.lang.String expandedUnitRepresentation(Unit u,
double[] minmax,
java.lang.String fDir,
java.lang.String fName,
java.lang.String[] hlDataNames)
throws java.io.IOException
- Throws:
java.io.IOException
leafUnitRepresentation
private java.lang.String leafUnitRepresentation(Unit u,
double[] minmax,
java.lang.String[] hlDataNames)
labelInfo
private java.lang.String labelInfo(Unit u,
double[] minmax)
createTooltipDataTable
private java.lang.String createTooltipDataTable(java.lang.String[] names,
double[] distances,
double minDistance,
double maxDistance,
java.lang.String[] hlDataNames)
createMiniMap
private java.lang.String createMiniMap(java.lang.String fName,
Unit u)
calcMinMax
private double[] calcMinMax(GrowingSOM gsom)
writeTooltipFile
private static void writeTooltipFile(java.lang.String fDir)
writeStyleFile
private static void writeStyleFile(java.lang.String fDir)